Research workbench
Structure in P212121 form of the pbp agtb in complex with agropinic acid from A.TUMEFACIEN R10
Analyse Structure in P212121 form of the pbp agtb in complex with agropinic acid from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6HLY
- Type
- protein
- Length
- 320 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Agropine permease
- UniProt
- W8FRA6
- Ligands
- G9Z
- Pockets
- 2 · best druggability 0.71
Structure
x-ray diffraction · 1 distinct chain · 47% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Agropine permease | protein | 320 | 47% helix, 19% strand | W8FRA6 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 295 | 0.71 | 0.85 | 36 | EDO, G9Z |
| 2 | 82 | 0.35 | 0.75 | 26 | empty |
Compared structures
- 6HLY · Structure in P212121 form of the PBP AgtB in complex with agropinic acid from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt W8FRA6
- Elsewhere: RCSB PDB 6HLY · PDBe 6HLY · UniProt W8FRA6
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