MolNFT v1 · #150888 · protein
E1 enzyme for ubiquitin like protein activation in complex with ubl
6H77: “E1 enzyme for ubiquitin like protein activation in complex with ubl”. X-ray diffraction, 3 ligands (ATP, MG, ZN). MolNFT v1 #150888 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6H77
- Type
- protein
- Length
- 1,517 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9GZZ9, P61960
- Ligands
- ATP, MG, ZN
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 301 | — | Q9GZZ9 |
| B | — | protein | 302 | — | Q9GZZ9 |
| C, D | — | protein | 301 | — | Q9GZZ9 |
| Q, R, S, T | — | protein | 78 | — | P61960 |
Ligands and binding sites
- ATP · Adenosine-5'-triphosphate · ligand · 4 copies · chains A, B, C, D
- MG · Magnesium ion · metal · 8 copies · chains A, B, C, D
- ZN · Zinc ion · metal · 4 copies · chains A, B, C, D
- EDO · 1,2-ethanediol · additive · 35 copies · chains A, B, T, C, Q, D, R, S
- PEG · Di(hydroxyethyl)ether · additive · 3 copies · chains C, B, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6H77 · E1 enzyme for ubiquitin like protein activation in complex with UBL · the same entry in another collection · chain T against T, TM-score 1.00
- Q9GZZ9 · AlphaFold monomer V2.0 prediction for ubiquitin-like modifier- activating enzyme 5… · a predicted model of the same protein · chain C against A, TM-score 1.00
- P61960 · AlphaFold monomer V2.0 prediction for ubiquitin-fold modifier 1 (P61960) · a predicted model of the same protein · chain Q against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9GZZ9
- Every structure of UniProt P61960
- Elsewhere: RCSB PDB 6H77 · PDBe 6H77 · UniProt Q9GZZ9 · UniProt P61960
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