UniProt P61960
Ubiquitin-fold Modifier 1 (P61960)
Ubiquitin-fold Modifier 1 (UniProt P61960): 19 experimental structures and 1 predicted model on GenesisL1, 1 ligand bound, 38 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P61960
- Protein
- Ubiquitin-fold Modifier 1
- Experimental structures
- 19
- Predicted models
- 1
- Ligands
- 1
- Pockets
- 38 · 7 records with a druggable one
Structures
20 records of P61960 in the MolNFT archive: 19 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 1WXS | Solution Structure of Ufm1, a ubiquitin-fold modifier | solution nmr | A | — | — |
| 1WXS | Solution structure of UFM1, a ubiquitin-fold modifier | solution nmr | A | — | — |
| 5HKH | Crystal structure of Ufm1 in complex with UBA5 | x-ray diffraction | A, C | — | 1 (best 0.45) |
| 5HKH | Crystal structure of UFM1 in complex with UBA5 | x-ray diffraction | A, C | — | 1 (best 0.45) |
| 5IA7 | Crystal structure of Ubiquitin fold modifier 1 (Ufm1) | x-ray diffraction | A, B | — | — |
| 5IA7 | Crystal structure of ubiquitin fold modifier 1 (UFM1) | x-ray diffraction | A, B | — | — |
| 5IA8 | Structure of a Ubiquitin like protein with an E1 fragment | x-ray diffraction | A, B | — | 1 (best 0.32) |
| 5IA8 | Structure of a ubiquitin like protein with an E1 fragment | x-ray diffraction | A, B | — | 1 (best 0.32) |
| 5IAA | Crystal structure of human UBA5 in complex with UFM1 | x-ray diffraction | C, D | — | 5 (best 0.67) |
| 5IAA | Crystal structure of human UBA5 in complex with UFM1 | x-ray diffraction | C, D | — | 5 (best 0.67) |
| 5L95 | Crystal structure of human UBA5 in complex with UFM1 and AMP | x-ray diffraction | C, D | AMP | 4 (best 0.70) |
| 5L95 | Crystal structure of human UBA5 in complex with UFM1 and AMP | x-ray diffraction | C, D | AMP | 4 (best 0.70) |
| 6H77 | E1 enzyme for ubiquitin like protein activation in complex with UBL | x-ray diffraction | Q, R, S, T | — | 7 (best 0.81) |
| 6H77 | E1 enzyme for ubiquitin like protein activation in complex with ubl | x-ray diffraction | Q, R, S, T | — | 7 (best 0.81) |
| 7W3N | Crystal structure of Ufm1 fused to UFBP1 UFIM | x-ray diffraction | A | — | — |
| 8BZR | UFC1-UFM1 conjugate | x-ray diffraction | B | — | 2 (best 0.62) |
| 8OHD | 60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (native) | electron microscopy | D | — | — |
| 8OJ0 | 60S ribosomal subunit bound to the E3-UFM1 complex - state 2 (native) | electron microscopy | D | — | — |
| 8OJ5 | 60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (in-vitro reconstitution) | electron microscopy | D | — | — |
| P61960 | AlphaFold monomer V2.0 prediction for ubiquitin-fold modifier 1 (P61960) | predicted | A | — | — |
Ligands
- AMP · Adenosine monophosphate · in 2 records
Experiment against prediction
- 6H77 chain Q against the predicted model P61960: TM-score 0.98, RMSD 0.46 Å
- 6H77 chain Q against the predicted model P61960: TM-score 0.98, RMSD 0.46 Å
- 5IA7 chain A against the predicted model P61960: TM-score 0.98, RMSD 0.49 Å
- 5IA7 chain A against the predicted model P61960: TM-score 0.98, RMSD 0.49 Å
- 8OJ5 chain D against the predicted model P61960: TM-score 0.97, RMSD 0.57 Å
- 8OHD chain D against the predicted model P61960: TM-score 0.97, RMSD 0.57 Å
- 5HKH chain C against the predicted model P61960: TM-score 0.97, RMSD 0.60 Å
- 5HKH chain C against the predicted model P61960: TM-score 0.97, RMSD 0.60 Å
- 8OJ0 chain D against the predicted model P61960: TM-score 0.97, RMSD 0.59 Å
- 5IA7 chain B against the predicted model P61960: TM-score 0.94, RMSD 1.27 Å
Elsewhere
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