MolNFT v1 · #150878 · protein
Structure of an evolved dimeric form of the ubid-class enzyme hmff from pelotomaculum thermopropionicum in complex with prfmn
6H6X: “Structure of an evolved dimeric form of the ubid-class enzyme hmff from pelotomaculum thermopropionicum in…”. X-ray diffraction, 4 ligands (4LU, K, MN). MolNFT v1 #150878 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6H6X
- Type
- protein
- Length
- 855 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A5D4Z9
- Ligands
- 4LU, K, MN, CA
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | — | protein | 427 | — | A5D4Z9 |
| A | — | protein | 428 | — | A5D4Z9 |
Ligands and binding sites
- 4LU · 1-deoxy-5-O-phosphono-1-(3,3,4,5-tetramethyl-9,11-dioxo-2,3,8,9,10,11-hexahydro-7H-quinolino[1,8-fg]pteridin-12-ium-7-yl)-D-ribitol · ligand · 2 copies · chains B, A
- K · Potassium ion · metal · 2 copies · chains B, A
- MN · Manganese (II) ion · metal · 2 copies · chains B, A
- CA · Calcium ion · metal · 2 copies · chains B, A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6H6X · Structure of an evolved dimeric form of the UbiD-class enzyme HmfF from Pelotomaculum… · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A5D4Z9
- Elsewhere: RCSB PDB 6H6X · PDBe 6H6X · UniProt A5D4Z9
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