MolNFT v1 · #150494 · protein
CDK2/CYCLIN A2 in complex with PYRAZOLO[4,3-D]PYRIMIDINE inhibitor LGR4455
6GVA: “CDK2/CYCLIN A2 in complex with PYRAZOLO[4,3-D]PYRIMIDINE inhibitor LGR4455”. X-ray diffraction, 3 ligands (FCQ, CL, BR). MolNFT v1 #150494 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6GVA
- Type
- protein
- Length
- 546 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P24941, P20248
- Ligands
- FCQ, CL, BR
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 288 | — | P24941 |
| B | — | protein | 258 | — | P20248 |
Ligands and binding sites
- FCQ · 5-(2-azanylethylsulfanyl)-3-propan-2-yl-~{N}-[(4-pyridin-2-ylphenyl)methyl]-2~{H}-pyrazolo[4,3-d]pyrimidin-7-amine · ligand · chains A
- CL · Chloride ion · ion · chains A
- BR · Bromide ion · ion · chains A
- EDO · 1,2-ethanediol · additive · 3 copies · chains A, B
- PG4 · Tetraethylene glycol · additive · chains B
- SGM · Monothioglycerol · additive · chains B
- PGE · Triethylene glycol · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6GVA · CDK2/cyclin A2 in complex with pyrazolo[4,3-d]pyrimidine inhibitor LGR4455 · the same entry in another collection · chain A against A, TM-score 1.00
- P20248 · AlphaFold monomer V2.0 prediction for cyclin-A2 (P20248) · a predicted model of the same protein · chain B against A, TM-score 0.99
- P24941 · AlphaFold monomer V2.0 prediction for cyclin-dependent kinase 2 (P24941) · a predicted model of the same protein · chain A against A, TM-score 0.91
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P24941
- Every structure of UniProt P20248
- Elsewhere: RCSB PDB 6GVA · PDBe 6GVA · UniProt P24941 · UniProt P20248
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