MolNFT v1 · #150318 · protein
Cell division regulator gpsb in complex with peptide fragment of L. monocytogenes penicillin binding protein PBPA1
6GPZ · Cell cycle protein gpsb: “Cell division regulator gpsb in complex with peptide fragment of L. monocytogenes penicillin binding protein…”. X-ray diffraction, 1 ligand (ZN). MolNFT v1 #150318 on GenesisL1: 3D structure, binding sites…
- PDB
- 6GPZ
- Type
- protein
- Length
- 128 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cell cycle protein gpsb; LMPBPA1
- UniProt
- P0CI74
- Ligands
- ZN
Structure
x-ray diffraction · 3 distinct chains · 66% helix, 6% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | Cell cycle protein gpsb | protein | 62 | 68% helix, 6% strand | P0CI74 |
| A | Cell cycle protein gpsb | protein | 63 | 68% helix, 6% strand | P0CI74 |
| E | LMPBPA1 | protein | 3 | 0% helix, 0% strand | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
3 interfaces between chains.
- B–A · 2372 Ų buried · 40 hydrogen bonds · protein-protein
- B–E · 220 Ų buried · 8 hydrogen bonds · protein-protein
- A–E · 40 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 6GPZ · Cell division regulator GpsB in complex with peptide fragment of L. monocytogenes… · the same entry in another collection · chain B against B, TM-score 1.00
- P0CI74 · AlphaFold monomer V2.0 prediction for cell cycle protein gpsb (P0CI74) · a predicted model of the same protein · chain A against A, TM-score 0.91
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0CI74
- Elsewhere: RCSB PDB 6GPZ · PDBe 6GPZ · UniProt P0CI74
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.