Research workbench
Cell division regulator gpsb in complex with peptide fragment of L. monocytogenes penicillin binding protein PBPA1
Analyse Cell division regulator gpsb in complex with peptide fragment of L.… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6GPZ
- Type
- protein
- Length
- 128 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cell cycle protein gpsb; LMPBPA1
- UniProt
- P0CI74
- Ligands
- ZN
Structure
x-ray diffraction · 3 distinct chains · 66% helix, 6% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | Cell cycle protein gpsb | protein | 62 | 68% helix, 6% strand | P0CI74 |
| A | Cell cycle protein gpsb | protein | 63 | 68% helix, 6% strand | P0CI74 |
| E | LMPBPA1 | protein | 3 | 0% helix, 0% strand | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
3 interfaces between chains.
- B–A · 2372 Ų buried · 40 hydrogen bonds · protein-protein
- B–E · 220 Ų buried · 8 hydrogen bonds · protein-protein
- A–E · 40 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 6GPZ · Cell division regulator GpsB in complex with peptide fragment of L. monocytogenes… · the same entry in another collection · chain B against B, TM-score 1.00
- P0CI74 · AlphaFold monomer V2.0 prediction for cell cycle protein gpsb (P0CI74) · a predicted model of the same protein · chain A against A, TM-score 0.91
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0CI74
- Elsewhere: RCSB PDB 6GPZ · PDBe 6GPZ · UniProt P0CI74
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