MolNFT v1 · #149622 · protein
Crystal structure of human carbonic anhydrase isozyme xiii with N- butyl-2,4-dichloro-5-sulfamoyl-benzamide
6G5U · Carbonic anhydrase 13: “Crystal structure of human carbonic anhydrase isozyme xiii with N- butyl-2,4-dichloro-5-sulfamoyl-benzamide”. X-ray diffraction, 2 ligands (ENN, ZN), 5 pockets (best druggability 0.76). MolNFT v1 #149622 on…
- PDB
- 6G5U
- Type
- protein
- Length
- 516 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Carbonic anhydrase 13
- EC
- 4.2.1.1
- UniProt
- Q8N1Q1
- Ligands
- ENN, ZN
- Pockets
- 5 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 16% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B, A | Carbonic anhydrase 13 (EC 4.2.1.1) | protein | 258 | 16% helix, 31% strand | Q8N1Q1 |
Ligands and binding sites
- ENN · ~{N}-butyl-2,4-bis(chloranyl)-5-sulfamoyl-benzamide · ligand · 2 copies · chains B, A
- ZN · Zinc ion · metal · 2 copies · chains B, A
- EDO · 1,2-ethanediol · additive · 3 copies · chains B, A
- CIT · Citric acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 240 | 0.76 | 0.90 | 35 | empty |
| 2 | 240 | 0.61 | 0.80 | 29 | ZN, ENN |
| 3 | 190 | 0.57 | 0.80 | 30 | ENN |
| 4 | 218 | 0.49 | 0.75 | 35 | empty |
| 5 | 63 | 0.27 | 0.73 | 17 | empty |
Interfaces
1 interface between chains.
- B–A · 697 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8N1Q1
- Elsewhere: RCSB PDB 6G5U · PDBe 6G5U · UniProt Q8N1Q1
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