MolNFT v1 · #149361 · protein
The crystal structure of encm complex with xenon under 15 bars xe pressure
6FY9 · Putative FAD-dependent oxygenase encm: “The crystal structure of encm complex with xenon under 15 bars xe pressure”. X-ray diffraction, 2 ligands (FAD, XE), 3 pockets (best druggability 0.87). MolNFT v1 #149361 on GenesisL1: 3D…
- PDB
- 6FY9
- Type
- protein
- Length
- 455 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative FAD-dependent oxygenase encm
- UniProt
- Q9KHK2
- Ligands
- FAD, XE
- Pockets
- 3 · best druggability 0.87
Structure
x-ray diffraction · 1 distinct chain · 33% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative FAD-dependent oxygenase encm | protein | 455 | 33% helix, 23% strand | Q9KHK2 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 763 | 0.87 | 0.90 | 80 | FAD, XE |
| 2 | 52 | 0.70 | 0.97 | 21 | empty |
| 3 | 68 | 0.29 | 0.74 | 17 | empty |
Compared structures
- 6FY9 · The crystal structure of EncM complex with xenon under 15 bars Xe pressure · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9KHK2
- Elsewhere: RCSB PDB 6FY9 · PDBe 6FY9 · UniProt Q9KHK2
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