Research workbench
The crystal structure of encm complex with xenon under 15 bars xe pressure
Analyse The crystal structure of encm complex with xenon under 15 bars xe pressure in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6FY9
- Type
- protein
- Length
- 455 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative FAD-dependent oxygenase encm
- UniProt
- Q9KHK2
- Ligands
- FAD, XE
- Pockets
- 3 · best druggability 0.87
Structure
x-ray diffraction · 1 distinct chain · 33% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative FAD-dependent oxygenase encm | protein | 455 | 33% helix, 23% strand | Q9KHK2 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 763 | 0.87 | 0.90 | 80 | FAD, XE |
| 2 | 52 | 0.70 | 0.97 | 21 | empty |
| 3 | 68 | 0.29 | 0.74 | 17 | empty |
Compared structures
- 6FY9 · The crystal structure of EncM complex with xenon under 15 bars Xe pressure · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9KHK2
- Elsewhere: RCSB PDB 6FY9 · PDBe 6FY9 · UniProt Q9KHK2
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