MolNFT v1 · #149148 · protein
Structure of F420H2 oxidase (fpra) co-crystallized with 10MM tb-XO4 and calcium chloride
6FRN: “Structure of F420H2 oxidase (fpra) co-crystallized with 10MM tb-XO4 and calcium chloride”. X-ray diffraction, 5 ligands (FMN, 7MT, CA). MolNFT v1 #149148 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6FRN
- Type
- protein
- Length
- 1,624 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- FMN, 7MT, CA, TB, NA
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 403 | — | — |
| B | — | protein | 403 | — | — |
| C, D | — | protein | 409 | — | — |
Ligands and binding sites
- FMN · Flavin mononucleotide · ligand · 4 copies · chains A, D, B, C
- 7MT · Tb-Xo4 · ligand · 4 copies · chains C, D
- CA · Calcium ion · metal · 15 copies · chains A, B, C, D
- TB · Terbium(iii) ion · metal · 4 copies · chains A, B, C, D
- NA · Sodium ion · metal · chains D
- GOL · Glycerol · additive · 6 copies · chains A, B, C, D
- PE4 · 2-{2-[2-(2-{2-[2-(2-ethoxy-ethoxy)-ethoxy]-ethoxy}-ethoxy)-ethoxy]-ethoxy}-ethanol · additive · 6 copies · chains B, C, A, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6FRN · Structure of F420H2 oxidase (FprA) co-crystallized with 10mM Tb-Xo4 and calcium chloride · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6FRN · PDBe 6FRN
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