MolNFT v1 · #148972 · protein

NEUROPILIN1-B1 domain in complex with EG01377, 0.9 ångström structure

6FMC: “NEUROPILIN1-B1 domain in complex with EG01377, 0.9 ångström structure”. X-ray diffraction, 1 ligand (DUE). MolNFT v1 #148972 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6FMC
Type: protein
Length: 158 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: O14786
Ligands: DUE

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	158	—	O14786

Ligands and binding sites

DUE · (2~{S})-2-[[3-[[5-[4-(aminomethyl)phenyl]-1-benzofuran-7-yl]sulfonylamino]thiophen-2-yl]carbonylamino]-5-carbamimidamido-pentanoic acid · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6FMC · Neuropilin1-b1 domain in complex with EG01377, 0.9 Angstrom structure · the same entry in another collection · chain A against A, TM-score 1.00
O14786 · AlphaFold monomer V2.0 prediction for neuropilin-1 (O14786) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O14786
Elsewhere: RCSB PDB 6FMC · PDBe 6FMC · UniProt O14786

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