MolNFT v1 · #148959 · protein

Structure of acmjrl, a mannose binding jacalin related lectin from ananas comosus, in complex with methyl-mannose.

6FLZ · Jacalin-like lectin: “Structure of acmjrl, a mannose binding jacalin related lectin from ananas comosus, in complex with…”. X-ray diffraction, 1 ligand (MMA), 1 pocket (best druggability 0.72). MolNFT v1 #148959 on GenesisL1: 3D…

PDB: 6FLZ
Type: protein
Length: 288 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Jacalin-like lectin
UniProt: Q53J09
Ligands: MMA
Pockets: 1 · best druggability 0.72

Structure

x-ray diffraction · 1 distinct chain · 0% helix, 67% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Jacalin-like lectin	protein	144	0% helix, 67% strand	Q53J09

Ligands and binding sites

MMA · methyl alpha-D-mannopyranoside · sugar · 3 copies · chains A, B
CIT · Citric acid · additive · 3 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	186	0.72	0.89	49	empty

Interfaces

1 interface between chains.

A–B · 713 Å² buried · 15 hydrogen bonds · protein-protein

Compared structures

6FLZ · Structure of AcmJRL, a mannose binding jacalin related lectin from Ananas comosus, in… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q53J09
Elsewhere: RCSB PDB 6FLZ · PDBe 6FLZ · UniProt Q53J09

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