Human JMJD5 (W414C) in complex with MN(II), nog and RCCD1 (139-143) (complex-5)

Structure

x-ray diffraction · 2 distinct chains.

Ligands and binding sites

• OGA · N-oxalylglycine · ligand · chains A, B
• MN · Manganese (II) ion · metal · chains A
• GOL · Glycerol · additive · 3 copies · chains A
• TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

• 6F4T · Human JMJD5 (W414C) in complex with Mn(II), NOG and RCCD1 (139-143) (complex-5) · the same entry in another collection · chain A against A, TM-score 1.00
• A6NED2 · AlphaFold monomer V2.0 prediction for RCC1 domain-containing protein 1 (A6NED2) · a predicted model of the same protein · chain B against A, TM-score 1.00
• Q8N371 · AlphaFold monomer V2.0 prediction for bifunctional peptidase and arginyl-hydroxylase… · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Every structure of UniProt Q8N371
• Every structure of UniProt A6NED2
• Elsewhere: RCSB PDB 6F4T · PDBe 6F4T · UniProt Q8N371 · UniProt A6NED2