MolNFT v1 · #148310 · protein
Crystal structure of ectonucleotide PHOSPHODIESTERASE/PYROPHOSPHATASE- 3 (NPP3) in complex with AP4A
6F2Y: “Crystal structure of ectonucleotide PHOSPHODIESTERASE/PYROPHOSPHATASE- 3 (NPP3) in complex with AP4A”. X-ray diffraction, 5 ligands (B4P, NAG, BMA). MolNFT v1 #148310 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6F2Y
- Type
- protein
- Length
- 1,439 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P97675
- Ligands
- B4P, NAG, BMA, ZN, CA
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 720 | — | P97675 |
| B | — | protein | 719 | — | P97675 |
Ligands and binding sites
- B4P · Bis(adenosine)-5'-tetraphosphate · ligand · 2 copies · chains A, B
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 17 copies · chains A, B
- BMA · beta-D-mannopyranose · sugar · chains B
- ZN · Zinc ion · metal · 4 copies · chains A, B
- CA · Calcium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6F2Y · Crystal structure of ectonucleotide phosphodiesterase/pyrophosphatase-3 (NPP3) in complex… · the same entry in another collection · chain A against A, TM-score 1.00
- P97675 · AlphaFold monomer V2.0 prediction for ectonucleotide PYROPHOSPHATASE/PHOSPHODIESTERASE… · a predicted model of the same protein · chain B against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P97675
- Elsewhere: RCSB PDB 6F2Y · PDBe 6F2Y · UniProt P97675
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