E-selectin lectin, EGF-like and two scr domains complexed with glycomimetic ligand BW69669

Structure

x-ray diffraction · 1 distinct chain.

Ligands and binding sites

• C4Z · (2~{R})-3-cyclohexyl-2-[(2~{R},3~{S},4~{S},5~{R}, 6~{R})-2-(hydroxymethyl)-6-[(1~{R},2~{R})-2-[(2~{S}, 3~{S},4~{R},5~{S},6~{S})-6-methyl-3,4,5-tris(oxidanyl)oxan-2-yl]oxycyclohexyl]oxy-3,5-bis(oxidanyl)oxan-4-yl]oxy-propanoic acid · ligand · chains A
• NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 7 copies · chains A
• CA · Calcium ion · metal · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

• 6EYI · E-selectin lectin, EGF-like and two SCR domains complexed with glycomimetic ligand BW69669 · the same entry in another collection · chain A against A, TM-score 1.00
• P16581 · AlphaFold monomer V2.0 prediction for E-selectin (P16581) · a predicted model of the same protein · chain A against A, TM-score 0.78

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Every structure of UniProt P16581
• Elsewhere: RCSB PDB 6EYI · PDBe 6EYI · UniProt P16581