MolNFT v1 · #148149 · protein
Re-refinement of the MCM2-7 double hexamer using isolde
6EYC: “Re-refinement of the MCM2-7 double hexamer using isolde”. Electron microscopy, 2 ligands (ADP, ZN). MolNFT v1 #148149 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6EYC
- Type
- protein
- Length
- 3,787 residues
- Chains
- 6
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P29469, P24279, P30665, P29496, P53091, P38132
- Ligands
- ADP, ZN
Structure
electron microscopy · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| 2 | — | protein | 603 | — | P29469 |
| 3 | — | protein | 605 | — | P24279 |
| 4 | — | protein | 641 | — | P30665 |
| 5 | — | protein | 633 | — | P29496 |
| 6 | — | protein | 616 | — | P53091 |
| 7 | — | protein | 689 | — | P38132 |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · 6 copies · chains 2, 6, 3, 5, 7, 4
- ZN · Zinc ion · metal · 5 copies · chains 2, 4, 5, 6, 7
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6EYC · Re-refinement of the MCM2-7 double hexamer using ISOLDE · the same entry in another collection · chain 7 against 7, TM-score 1.00
- P38132 · AlphaFold monomer V2.0 prediction for DNA replication licensing factor MCM7 (P38132) · a predicted model of the same protein · chain 7 against A, TM-score 0.91
- P24279 · AlphaFold monomer V2.0 prediction for DNA replication licensing factor MCM3 (P24279) · a predicted model of the same protein · chain 3 against A, TM-score 0.87
- P29496 · AlphaFold monomer V2.0 prediction for minichromosome maintenance protein 5 (P29496) · a predicted model of the same protein · chain 5 against A, TM-score 0.67
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P29469
- Every structure of UniProt P24279
- Every structure of UniProt P30665
- Every structure of UniProt P29496
- Every structure of UniProt P53091
- Every structure of UniProt P38132
- Elsewhere: RCSB PDB 6EYC · PDBe 6EYC · UniProt P29469 · UniProt P24279 · UniProt P30665 · UniProt P29496 · UniProt P53091 · UniProt P38132
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