MolNFT v1 · #147681 · protein

Crystal structure of MMP12 in complex with inhibitor BE7.

6EKN · Macrophage metalloelastase: “Crystal structure of MMP12 in complex with inhibitor BE7.”. X-ray diffraction, 3 ligands (B9N, CA, ZN), 2 pockets (best druggability 0.58). MolNFT v1 #147681 on GenesisL1: 3D structure, binding sites and…

PDB: 6EKN
Type: protein
Length: 159 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Macrophage metalloelastase
EC: 3.4.24.65
UniProt: P39900
Ligands: B9N, CA, ZN
Pockets: 2 · best druggability 0.58

Structure

x-ray diffraction · 1 distinct chain · 25% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Macrophage metalloelastase (EC 3.4.24.65)	protein	159	25% helix, 17% strand	P39900

Ligands and binding sites

B9N · (2~{S})-2-[2-[4-(4-methoxyphenyl) phenyl]sulfonylphenyl]pentanedioic acid · ligand · chains A
CA · Calcium ion · metal · 3 copies · chains A
ZN · Zinc ion · metal · 2 copies · chains A
EDO · 1,2-ethanediol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	158	0.58	0.82	25	B9N
2	81	0.35	0.75	22	empty

Compared structures

6EKN · Crystal structure of MMP12 in complex with inhibitor BE7. · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P39900
Elsewhere: RCSB PDB 6EKN · PDBe 6EKN · UniProt P39900

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