MolNFT v1 · #147494 · protein

Crystal structure of mouse protocadherin-15 EC9-MAD12

6EET: “Crystal structure of mouse protocadherin-15 EC9-MAD12”. X-ray diffraction, 3 ligands (NAG, MAN, CA). MolNFT v1 #147494 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6EET
Type: protein
Length: 443 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q99PJ1
Ligands: NAG, MAN, CA

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	443	—	Q99PJ1

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 4 copies · chains A
MAN · alpha-D-mannopyranose · sugar · 3 copies · chains A
CA · Calcium ion · metal · 4 copies · chains A
EPE · 4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6EET · Crystal structure of mouse Protocadherin-15 EC9-MAD12 · the same entry in another collection · chain A against A, TM-score 1.00
Q99PJ1 · AlphaFold monomer V2.0 prediction for protocadherin-15 (Q99PJ1) · a predicted model of the same protein · chain A against A, TM-score 0.93

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q99PJ1
Elsewhere: RCSB PDB 6EET · PDBe 6EET · UniProt Q99PJ1

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