MolNFT v1 · #147365 · protein
Glycosylated FCGR3B / CD16B in complex with afucosylated IGG1 Fc
6EAQ: “Glycosylated FCGR3B / CD16B in complex with afucosylated IGG1 Fc”. X-ray diffraction, 4 ligands (NAG, BMA, MAN). MolNFT v1 #147365 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6EAQ
- Type
- protein
- Length
- 586 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DOX5, O75015
- Ligands
- NAG, BMA, MAN, GAL
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 210 | — | P0DOX5 |
| B | — | protein | 212 | — | P0DOX5 |
| C | — | protein | 164 | — | O75015 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 11 copies · chains A, C, B
- BMA · beta-D-mannopyranose · sugar · 4 copies · chains A, B
- MAN · alpha-D-mannopyranose · sugar · 4 copies · chains A, B
- GAL · beta-D-galactopyranose · sugar · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6EAQ · Glycosylated FCGR3B / CD16b in complex with afucosylated IgG1 Fc · the same entry in another collection · chain A against A, TM-score 1.00
- O75015 · AlphaFold monomer V2.0 prediction for low affinity immunoglobulin gamma Fc region… · a predicted model of the same protein · chain C against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DOX5
- Every structure of UniProt O75015
- Elsewhere: RCSB PDB 6EAQ · PDBe 6EAQ · UniProt P0DOX5 · UniProt O75015
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