MolNFT v1 · #147290 · protein

Crystal structure of human protocadherin-15 EC3-5 CD2-1

6E8F: “Crystal structure of human protocadherin-15 EC3-5 CD2-1”. X-ray diffraction, 2 ligands (CA, NA). MolNFT v1 #147290 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6E8F
Type: protein
Length: 1,021 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q96QU1
Ligands: CA, NA

Structure

x-ray diffraction · 3 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	343	—	Q96QU1
C	—	protein	333	—	Q96QU1
B	—	protein	345	—	Q96QU1

Ligands and binding sites

CA · Calcium ion · metal · 13 copies · chains A, C, B
NA · Sodium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6E8F · Crystal Structure of Human Protocadherin-15 EC3-5 CD2-1 · the same entry in another collection · chain A against A, TM-score 1.00
Q96QU1 · AlphaFold monomer V2.0 prediction for protocadherin-15 (Q96QU1) · a predicted model of the same protein · chain C against A, TM-score 0.58

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q96QU1
Elsewhere: RCSB PDB 6E8F · PDBe 6E8F · UniProt Q96QU1

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