MolNFT v1 · #147283 · protein
Solution structure of ZZZ3 zz domain in complex with histone H3K4AC peptide
6E86 · Zz-type zinc finger-containing protein 3: “Solution structure of ZZZ3 zz domain in complex with histone H3K4AC peptide”. Solution nmr, 1 ligand (ZN). MolNFT v1 #147283 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6E86
- Type
- protein
- Length
- 72 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Zz-type zinc finger-containing protein 3; H3K4AC
- UniProt
- Q8IYH5
- Ligands
- ZN
Structure
solution nmr · 2 distinct chains · 4% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | Zz-type zinc finger-containing protein 3 | protein | 64 | 5% helix, 23% strand | Q8IYH5 |
| A | H3K4AC | protein | 8 | 0% helix, 13% strand | — |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- B–A · 284 Ų buried · 12 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 1 modified (acetylation).
Compared structures
- 6E86 · Solution structure of ZZZ3 ZZ domain in complex with histone H3K4ac peptide · the same entry in another collection · chain B against B, TM-score 1.00
- Q8IYH5 · AlphaFold monomer V2.0 prediction for zz-type zinc finger-containing protein 3 (Q8IYH5) · a predicted model of the same protein · chain B against A, TM-score 0.88
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8IYH5
- Elsewhere: RCSB PDB 6E86 · PDBe 6E86 · UniProt Q8IYH5
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