MolNFT v1 · #146967 · protein

CO(II)-bound structure of the engineered cyt CB562 variant, CH3

6DYC: “CO(II)-bound structure of the engineered cyt CB562 variant, CH3”. X-ray diffraction, 3 ligands (HEC, CO, CA). MolNFT v1 #146967 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6DYC
Type: protein
Length: 212 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P0ABE7
Ligands: HEC, CO, CA

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	—	protein	106	—	P0ABE7

Ligands and binding sites

HEC · Heme C · ligand · 2 copies · chains A, B
CO · Cobalt (II) ion · metal · chains A, B
CA · Calcium ion · metal · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6DYC · Co(II)-bound structure of the engineered cyt cb562 variant, CH3 · the same entry in another collection · chain A against A, TM-score 1.00
P0ABE7 · AlphaFold monomer V2.0 prediction for soluble cytochrome B562 (P0ABE7) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0ABE7
Elsewhere: RCSB PDB 6DYC · PDBe 6DYC · UniProt P0ABE7

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