MolNFT v1 · #146702 · protein + DNA + RNA
Crystal structure of bacillus halodurans ribonuclease H1 in complex with an RNA/DNA hybrid: reaction in 40 mm MN2+ and 200 mm K+ for 40 S at 21 C
6DPF: “Crystal structure of bacillus halodurans ribonuclease H1 in complex with an RNA/DNA hybrid: reaction in 40 mm…”. X-ray diffraction, 3 ligands (MN, K, IOD). MolNFT v1 #146702 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6DPF
- Type
- protein + DNA + RNA
- Length
- 148 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9KEI9
- Ligands
- MN, K, IOD
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 136 | — | Q9KEI9 |
| B | — | rna | 4 | — | — |
| b | — | rna | 2 | — | — |
| C | — | dna | 6 | — | — |
Ligands and binding sites
- MN · Manganese (II) ion · metal · 5 copies · chains A, b, B
- K · Potassium ion · metal · chains A, B, b
- IOD · Iodide ion · ion · 5 copies · chains A, b
- EDO · 1,2-ethanediol · additive · 4 copies · chains A, C
- GOL · Glycerol · additive · 3 copies · chains A, C
- PGE · Triethylene glycol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6DPF · Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9KEI9
- Elsewhere: RCSB PDB 6DPF · PDBe 6DPF · UniProt Q9KEI9
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