MolNFT v1 · #146263 · protein + RNA
Structure of methylphosphate capping enzyme methyltransferase domain in complex with 5' end of 7SK RNA
6DCB: “Structure of methylphosphate capping enzyme methyltransferase domain in complex with 5' end of 7SK RNA”. X-ray diffraction, 1 ligand (SO4). MolNFT v1 #146263 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6DCB
- Type
- protein + RNA
- Length
- 262 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q7L2J0
- Ligands
- SO4
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | — | rna | 36 | — | — |
| A | — | protein | 226 | — | Q7L2J0 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6DCB · Structure of methylphosphate capping enzyme methyltransferase domain in complex with 5'… · the same entry in another collection · chain B against B, TM-score 1.00
- Q7L2J0 · AlphaFold monomer V2.0 prediction for 7SK snrna methylphosphate capping enzyme (Q7L2J0) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7L2J0
- Elsewhere: RCSB PDB 6DCB · PDBe 6DCB · UniProt Q7L2J0
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