MolNFT v1 · #146246 · protein + DNA
Cryo-EM structure of rag in complex with 12-rss and 23-rss substrate dnas
6DBU: “Cryo-EM structure of rag in complex with 12-rss and 23-rss substrate dnas”. Electron microscopy, 2 ligands (CA, ZN). MolNFT v1 #146246 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6DBU
- Type
- protein + DNA
- Length
- 1,924 residues
- Chains
- 8
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0AEX9, O13033, Q1RLW7
- Ligands
- CA, ZN
Structure
electron microscopy · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | — | protein | 543 | — | P0AEX9, O13033 |
| B, D | — | protein | 351 | — | Q1RLW7 |
| E, G | — | dna | 34 | — | — |
| F, H | — | dna | 34 | — | — |
Ligands and binding sites
- CA · Calcium ion · metal · 4 copies · chains A, H, C, F
- ZN · Zinc ion · metal · 2 copies · chains A, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6DBU · Cryo-EM structure of RAG in complex with 12-RSS and 23-RSS substrate DNAs · the same entry in another collection · chain H against H, TM-score 1.00
- O13033 · AlphaFold monomer V2.0 prediction for V(D)J recombination-activating protein 1 (O13033) · a predicted model of the same protein · chain A against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0AEX9
- Every structure of UniProt O13033
- Every structure of UniProt Q1RLW7
- Elsewhere: RCSB PDB 6DBU · PDBe 6DBU · UniProt P0AEX9 · UniProt O13033 · UniProt Q1RLW7
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