MolNFT v1 · #146157 · protein

Crystal structure of corynebacterium diphtheriae udp-galactopyranose mutase in complex with udp-galnac (open, oxidized)

6D99: “Crystal structure of corynebacterium diphtheriae udp-galactopyranose mutase in complex with udp-galnac (open…”. X-ray diffraction, 3 ligands (FAD, UD2, NA), 2 pockets (best druggability 0.82). MolNFT v1 #146157 on GenesisL1: 3D…

PDB: 6D99
Type: protein
Length: 386 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Udp-galactopyranose mutase
UniProt: A0A246CDW5
Ligands: FAD, UD2, NA
Pockets: 2 · best druggability 0.82

Structure

x-ray diffraction · 1 distinct chain · 39% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Udp-galactopyranose mutase	protein	386	39% helix, 19% strand	A0A246CDW5

Ligands and binding sites

FAD · Flavin-adenine dinucleotide · ligand · chains A
UD2 · Uridine-diphosphate-N-acetylgalactosamine · ligand · chains A
NA · Sodium ion · metal · chains A
IPA · Isopropyl alcohol · additive · 5 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1024	0.82	0.83	90	FAD, UD2
2	106	0.38	0.75	19	empty

Compared structures

6D99 · Crystal structure of Corynebacterium diphtheriae UDP-galactopyranose mutase in complex… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A246CDW5
Elsewhere: RCSB PDB 6D99 · PDBe 6D99 · UniProt A0A246CDW5

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