MolNFT v1 · #146087 · protein
Crystal structure of SPERMIDINE/SPERMINE N-acetyltransferase speg from yersinia pestis in complex with calcium ions.
6D72: “Crystal structure of SPERMIDINE/SPERMINE N-acetyltransferase speg from yersinia pestis in complex with…”. X-ray diffraction, 1 ligand (CA). MolNFT v1 #146087 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6D72
- Type
- protein
- Length
- 523 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q0WD68
- Ligands
- CA
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 170 | — | Q0WD68 |
| B | — | protein | 176 | — | Q0WD68 |
| C | — | protein | 177 | — | Q0WD68 |
Ligands and binding sites
- CA · Calcium ion · metal · 3 copies · chains A, B, C
- MLI · Malonate ion · additive · 7 copies · chains A, B, C
- PEG · Di(hydroxyethyl)ether · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6D72 · Crystal structure of spermidine/spermine N-acetyltransferase SpeG from Yersinia pestis in… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q0WD68
- Elsewhere: RCSB PDB 6D72 · PDBe 6D72 · UniProt Q0WD68
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