MolNFT v1 · #146039 · protein
Hexagonal thermolysin cryocooled to 100 K with 20% xylose as cryoprotectant
6D5P: “Hexagonal thermolysin cryocooled to 100 K with 20% xylose as cryoprotectant”. X-ray diffraction, 3 ligands (XYP, CA, ZN). MolNFT v1 #146039 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6D5P
- Type
- protein
- Length
- 318 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Thermolysin
- EC
- 3.4.24.27
- UniProt
- P00800
- Ligands
- XYP, CA, ZN
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Thermolysin (EC 3.4.24.27) | protein | 318 | 41% helix, 18% strand | P00800 |
Ligands and binding sites
- XYP · beta-D-xylopyranose · sugar · 3 copies · chains A
- CA · Calcium ion · metal · 4 copies · chains A
- ZN · Zinc ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6D5P · Hexagonal thermolysin cryocooled to 100 K with 20% xylose as cryoprotectant · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00800
- Elsewhere: RCSB PDB 6D5P · PDBe 6D5P · UniProt P00800
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