MolNFT v1 · #145805 · protein + RNA
HIV-1 tar loop in complex with TAT:AFF4:P-tefb
6CYT: “HIV-1 tar loop in complex with TAT:AFF4:P-tefb”. X-ray diffraction, 2 ligands (ACE, ZN). MolNFT v1 #145805 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6CYT
- Type
- protein + RNA
- Length
- 670 residues
- Chains
- 5
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P50750, O60563, Q9UHB7, A0A0C5HAL9
- Ligands
- ACE, ZN
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 319 | — | P50750 |
| B | — | protein | 255 | — | O60563 |
| C | — | protein | 31 | — | Q9UHB7 |
| D | — | protein | 48 | — | A0A0C5HAL9 |
| N | — | rna | 17 | — | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6CYT · HIV-1 TAR loop in complex with Tat:AFF4:P-TEFb · the same entry in another collection · chain N against N, TM-score 1.00
- P50750 · AlphaFold monomer V2.0 prediction for cyclin-dependent kinase 9 (P50750) · a predicted model of the same protein · chain A against A, TM-score 0.99
- O60563 · AlphaFold monomer V2.0 prediction for cyclin-T1 (O60563) · a predicted model of the same protein · chain B against A, TM-score 0.95
- Q9UHB7 · AlphaFold monomer V2.0 prediction for AF4/FMR2 family member 4 (Q9UHB7) · a predicted model of the same protein · chain C against A, TM-score 0.54
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P50750
- Every structure of UniProt O60563
- Every structure of UniProt Q9UHB7
- Every structure of UniProt A0A0C5HAL9
- Elsewhere: RCSB PDB 6CYT · PDBe 6CYT · UniProt P50750 · UniProt O60563 · UniProt Q9UHB7 · UniProt A0A0C5HAL9
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