MolNFT v1 · #145678 · protein

Mouse protocadherin-15 extracellular cadherin domains 1 through 3

6CV7: “Mouse protocadherin-15 extracellular cadherin domains 1 through 3”. X-ray diffraction, 3 ligands (MAN, NAG, CA). MolNFT v1 #145678 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6CV7
Type: protein
Length: 365 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q99PJ1
Ligands: MAN, NAG, CA

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	365	—	Q99PJ1

Ligands and binding sites

MAN · alpha-D-mannopyranose · sugar · 5 copies · chains A
NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 3 copies · chains A
CA · Calcium ion · metal · 5 copies · chains A
EDO · 1,2-ethanediol · additive · 5 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6CV7 · Mouse Protocadherin-15 Extracellular Cadherin Domains 1 through 3 · the same entry in another collection · chain A against A, TM-score 1.00
Q99PJ1 · AlphaFold monomer V2.0 prediction for protocadherin-15 (Q99PJ1) · a predicted model of the same protein · chain A against A, TM-score 0.64

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q99PJ1
Elsewhere: RCSB PDB 6CV7 · PDBe 6CV7 · UniProt Q99PJ1

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