MolNFT v1 · #145488 · protein
Structure of the USP15 deubiquitinase domain in complex with a third- generation inhibitory ubv
6CPM: “Structure of the USP15 deubiquitinase domain in complex with a third- generation inhibitory ubv”. X-ray diffraction, 3 ligands (CA, NA, ZN). MolNFT v1 #145488 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6CPM
- Type
- protein
- Length
- 828 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9Y4E8
- Ligands
- CA, NA, ZN
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C | — | protein | 339 | — | Q9Y4E8 |
| D | — | protein | 332 | — | Q9Y4E8 |
| E | — | protein | 79 | — | — |
| F | — | protein | 78 | — | — |
Ligands and binding sites
- CA · Calcium ion · metal · 5 copies · chains C, D, E
- NA · Sodium ion · metal · 3 copies · chains C, D, F
- ZN · Zinc ion · metal · 2 copies · chains C, D
- GOL · Glycerol · additive · 3 copies · chains C, F, D, E
- EDO · 1,2-ethanediol · additive · chains C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6CPM · Structure of the USP15 deubiquitinase domain in complex with a third-generation… · the same entry in another collection · chain C against C, TM-score 1.00
- Q9Y4E8 · AlphaFold monomer V2.0 prediction for ubiquitin carboxyl-terminal hydrolase 15 (Q9Y4E8) · a predicted model of the same protein · chain D against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Y4E8
- Elsewhere: RCSB PDB 6CPM · PDBe 6CPM · UniProt Q9Y4E8
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