MolNFT v1 · #145376 · protein
MT1-mmp hpx domain with blade 2 loop bound to nanodiscs
6CM1: “MT1-mmp hpx domain with blade 2 loop bound to nanodiscs”. Solution nmr, 3 ligands (PX4, NA, CL). MolNFT v1 #145376 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6CM1
- Type
- protein
- Length
- 618 residues
- Chains
- 3
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P50281, P02647
- Ligands
- PX4, NA, CL
Structure
solution nmr · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 196 | — | P50281 |
| B, C | — | protein | 211 | — | P02647 |
Ligands and binding sites
- PX4 · 1,2-dimyristoyl-sn-glycero-3-phosphocholine · ligand · 218 copies · chains A, B, C
- NA · Sodium ion · metal · chains A
- CL · Chloride ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6CM1 · MT1-MMP HPX Domain with Blade 2 Loop Bound to Nanodiscs · the same entry in another collection · chain B against B, TM-score 1.00
- P50281 · AlphaFold monomer V2.0 prediction for matrix metalloproteinase-14 (P50281) · a predicted model of the same protein · chain A against A, TM-score 0.96
- P02647 · AlphaFold monomer V2.0 prediction for apolipoprotein a-I (P02647) · a predicted model of the same protein · chain B against A, TM-score 0.52
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P50281
- Every structure of UniProt P02647
- Elsewhere: RCSB PDB 6CM1 · PDBe 6CM1 · UniProt P50281 · UniProt P02647
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