MolNFT v1 · #145323 · protein
N. meningitidis cmp-sialic acid synthetase, ligand-free
6CKJ · N-acylneuraminate cytidylyltransferase: “N. meningitidis cmp-sialic acid synthetase, ligand-free”. X-ray diffraction, 1 ligand (CA), 1 pocket (best druggability 0.53). MolNFT v1 #145323 on GenesisL1: 3D structure, binding sites and…
- PDB
- 6CKJ
- Type
- protein
- Length
- 225 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- N-acylneuraminate cytidylyltransferase
- EC
- 2.7.7.43
- UniProt
- P0A0Z8
- Ligands
- CA
- Pockets
- 1 · best druggability 0.53
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | N-acylneuraminate cytidylyltransferase (EC 2.7.7.43) | protein | 225 | 34% helix, 25% strand | P0A0Z8 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 150 | 0.53 | 0.80 | 24 | empty |
Compared structures
- 6CKJ · N. meningitidis CMP-sialic acid synthetase, ligand-free · the same entry in another collection · chain A against A, TM-score 1.00
- P0A0Z8 · AlphaFold monomer V2.0 prediction for N-acylneuraminate cytidylyltransferase (P0A0Z8) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A0Z8
- Elsewhere: RCSB PDB 6CKJ · PDBe 6CKJ · UniProt P0A0Z8
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