MolNFT v1 · #145252 · protein + DNA
Cryo-EM structure of mouse RAG1/2 hfc complex containing partial HMGB1 LINKER(3.9 a)
6CIJ: “Cryo-EM structure of mouse RAG1/2 hfc complex containing partial HMGB1 LINKER(3.9 a)”. Electron microscopy, 2 ligands (ZN, CA). MolNFT v1 #145252 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6CIJ
- Type
- protein + DNA
- Length
- 2,257 residues
- Chains
- 11
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P15919, P09429, P21784
- Ligands
- ZN, CA
Structure
electron microscopy · 11 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 614 | — | P15919 |
| C | — | protein | 616 | — | P15919 |
| F | — | dna | 46 | — | — |
| I | — | dna | 16 | — | — |
| J | — | dna | 19 | — | — |
| G | — | dna | 60 | — | — |
| N | — | protein | 133 | — | P09429 |
| L | — | dna | 30 | — | — |
| D | — | protein | 340 | — | P21784 |
| B | — | protein | 342 | — | P21784 |
| M | — | dna | 41 | — | — |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains A, C
- CA · Calcium ion · metal · 2 copies · chains A, F, C, G
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6CIJ · Cryo-EM structure of mouse RAG1/2 HFC complex containing partial HMGB1 linker(3.9 A) · the same entry in another collection · chain M against M, TM-score 1.00
- P15919 · AlphaFold monomer V2.0 prediction for V(D)J recombination-activating protein 1 (P15919) · a predicted model of the same protein · chain C against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P15919
- Every structure of UniProt P09429
- Every structure of UniProt P21784
- Elsewhere: RCSB PDB 6CIJ · PDBe 6CIJ · UniProt P15919 · UniProt P09429 · UniProt P21784
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