MolNFT v1 · #145207 · protein
Crystal structure of a natively-glycosylated B41 SOSIP.664 HIV-1 envelope trimer in complex with the broadly-neutralizing antibodies BG18 and 35O22
6CH9: “Crystal structure of a natively-glycosylated B41 SOSIP.664 HIV-1 envelope trimer in complex with the…”. X-ray diffraction, 3 ligands (NAG, BMA, MAN). MolNFT v1 #145207 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6CH9
- Type
- protein
- Length
- 1,469 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- B3UEZ6, B3UES2
- Ligands
- NAG, BMA, MAN
Structure
x-ray diffraction · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | — | protein | 136 | — | B3UEZ6 |
| D | — | protein | 236 | — | — |
| E | — | protein | 213 | — | — |
| G | — | protein | 448 | — | B3UES2 |
| Q | — | protein | 231 | — | — |
| R | — | protein | 205 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 34 copies · chains B, D, G, Q, E
- BMA · beta-D-mannopyranose · sugar · 12 copies · chains D, E, Q
- MAN · alpha-D-mannopyranose · sugar · 10 copies · chains D, E, G, Q, R
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6CH9 · Crystal structure of a natively-glycosylated B41 SOSIP.664 HIV-1 Envelope Trimer in… · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B3UEZ6
- Every structure of UniProt B3UES2
- Elsewhere: RCSB PDB 6CH9 · PDBe 6CH9 · UniProt B3UEZ6 · UniProt B3UES2
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