MolNFT v1 · #145206 · protein
Crystal structure of a natively-glycosylated BG505 SOSIP.664 HIV-1 envelope trimer in complex with the broadly-neutralizing antibodies BG18 and 35O22
6CH8: “Crystal structure of a natively-glycosylated BG505 SOSIP.664 HIV-1 envelope trimer in complex with the…”. X-ray diffraction, 3 ligands (MAN, NAG, BMA). MolNFT v1 #145206 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6CH8
- Type
- protein
- Length
- 1,474 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q2N0S7, Q2N0S6
- Ligands
- MAN, NAG, BMA
Structure
x-ray diffraction · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | — | protein | 139 | — | Q2N0S7 |
| D | — | protein | 235 | — | — |
| E | — | protein | 210 | — | — |
| G | — | protein | 451 | — | Q2N0S6 |
| Q | — | protein | 228 | — | — |
| R | — | protein | 211 | — | — |
Ligands and binding sites
- MAN · alpha-D-mannopyranose · sugar · 42 copies · chains D, E, G, Q, R
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 36 copies · chains B, E, G, D, Q
- BMA · beta-D-mannopyranose · sugar · 16 copies · chains D, E, G, Q
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6CH8 · Crystal structure of a natively-glycosylated BG505 SOSIP.664 HIV-1 Envelope Trimer in… · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2N0S7
- Every structure of UniProt Q2N0S6
- Elsewhere: RCSB PDB 6CH8 · PDBe 6CH8 · UniProt Q2N0S7 · UniProt Q2N0S6
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