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MolNFT v1 · #143680 · protein

Orthorhombic trypsin cryocooled to 100 K with 50% xylose as cryoprotectant

6B6Q: “Orthorhombic trypsin cryocooled to 100 K with 50% xylose as cryoprotectant”. X-ray diffraction, 5 ligands (BEN, XYP, XYS). MolNFT v1 #143680 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6B6Q
Type
protein
Length
223 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P00760
Ligands
BEN, XYP, XYS, CA, SO4

Structure

x-ray diffraction · 1 distinct chain.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein223—P00760

Ligands and binding sites

  • BEN · Benzamidine · ligand · chains A
  • XYP · beta-D-xylopyranose · sugar · chains A
  • XYS · alpha-D-xylopyranose · sugar · chains A
  • CA · Calcium ion · metal · chains A
  • SO4 · Sulfate ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6B6Q · Orthorhombic trypsin cryocooled to 100 K with 50% xylose as cryoprotectant · the same entry in another collection · chain A against A, TM-score 1.00
  • 1TNL · Prediction of novel serine protease inhibitors · a predicted model of the same protein · chain A against A, TM-score 1.00
  • 1TNJ · Prediction of novel serine protease inhibitors · a predicted model of the same protein · chain A against A, TM-score 1.00
  • 1TNK · Prediction of novel serine protease inhibitors · a predicted model of the same protein · chain A against A, TM-score 1.00
  • 1TNG · Prediction of novel serine protease inhibitors · a predicted model of the same protein · chain A against A, TM-score 1.00
  • 1TNH · Prediction of novel serine protease inhibitors · a predicted model of the same protein · chain A against A, TM-score 1.00
  • 1TNI · Prediction of novel serine protease inhibitors · a predicted model of the same protein · chain A against A, TM-score 1.00

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