MolNFT v1 · #143603 · protein
Crystal structure of human GLE1 ctd-NUP42 gbm-DDX19B(AMPPNP) complex
6B4J: “Crystal structure of human GLE1 ctd-NUP42 gbm-DDX19B(AMPPNP) complex”. X-ray diffraction, 3 ligands (ANP, MG, PO4). MolNFT v1 #143603 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6B4J
- Type
- protein
- Length
- 1,564 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q53GS7, Q9UMR2
- Ligands
- ANP, MG, PO4
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B, A | — | protein | 315 | — | Q53GS7 |
| C | — | protein | 44 | — | — |
| D | — | protein | 38 | — | — |
| E, F | — | protein | 426 | — | Q9UMR2 |
Ligands and binding sites
- ANP · Phosphoaminophosphonic acid-adenylate ester · ligand · 2 copies · chains E, F
- MG · Magnesium ion · metal · 2 copies · chains E, F
- PO4 · Phosphate ion · ion · 6 copies · chains B, A, E, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6B4J · Crystal structure of human Gle1 CTD-Nup42 GBM-DDX19B(AMPPNP) complex · the same entry in another collection · chain F against F, TM-score 1.00
- Q53GS7 · AlphaFold monomer V2.0 prediction for nucleoporin GLE1 (Q53GS7) · a predicted model of the same protein · chain A against A, TM-score 0.99
- Q9UMR2 · AlphaFold monomer V2.0 prediction for ATP-dependent RNA helicase DDX19B (Q9UMR2) · a predicted model of the same protein · chain E against A, TM-score 0.91
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q53GS7
- Every structure of UniProt Q9UMR2
- Elsewhere: RCSB PDB 6B4J · PDBe 6B4J · UniProt Q53GS7 · UniProt Q9UMR2
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