MolNFT v1 · #143091 · protein
VPS4P-VTA1P complex with peptide binding to the central pore of VPS4P
6AP1: “VPS4P-VTA1P complex with peptide binding to the central pore of VPS4P”. Electron microscopy, 5 ligands (ADP, BEF, ACE). MolNFT v1 #143091 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6AP1
- Type
- protein
- Length
- 2,404 residues
- Chains
- 19
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P52917, Q9I747, Q06263
- Ligands
- ADP, BEF, ACE, MG, NH2
Structure
electron microscopy · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 314 | — | P52917, Q9I747 |
| B, C, D | — | protein | 322 | — | P52917, Q9I747 |
| E | — | protein | 304 | — | P52917, Q9I747 |
| G | — | protein | 8 | — | — |
| F | — | protein | 308 | — | P52917, Q9I747 |
| H, I, J, K, L, M, N, O, P, Q, R, S | — | protein | 42 | — | Q06263 |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · 5 copies · chains A, B, C, D, E
- BEF · Beryllium trifluoride ion · ligand · 3 copies · chains A, B, C, D
- ACE · Acetyl group · ligand · chains A, G
- MG · Magnesium ion · metal · 4 copies · chains A, B, C, D
- NH2 · Amino group · ion · chains G
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6AP1 · Vps4p-Vta1p complex with peptide binding to the central pore of Vps4p · the same entry in another collection · chain J against J, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P52917
- Every structure of UniProt Q9I747
- Every structure of UniProt Q06263
- Elsewhere: RCSB PDB 6AP1 · PDBe 6AP1 · UniProt P52917 · UniProt Q9I747 · UniProt Q06263
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