MolNFT v1 · #142465 · protein
Ajlec from the sea anemone anthopleura japonica
6A56: “Ajlec from the sea anemone anthopleura japonica”. X-ray diffraction, 4 ligands (SNN, BGC, GAL). MolNFT v1 #142465 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6A56
- Type
- protein
- Length
- 326 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ajlec
- Ligands
- SNN, BGC, GAL, CA
Structure
x-ray diffraction · 1 distinct chain · 7% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Ajlec | protein | 163 | 7% helix, 41% strand | — |
Ligands and binding sites
- SNN · L-3-aminosuccinimide · ligand · 2 copies · chains A, B
- BGC · beta-D-glucopyranose · sugar · 2 copies · chains A, B
- GAL · beta-D-galactopyranose · sugar · 2 copies · chains A, B
- CA · Calcium ion · metal · 4 copies · chains A, B
- EPE · 4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 462 Ų buried · 6 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 disulfide, 4 covalent, 2 modified (disulfide, covalent ligand, cyclization).
Compared structures
- 6A56 · AJLec from the Sea Anemone Anthopleura japonica · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6A56 · PDBe 6A56
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