MolNFT v1 · #141913 · protein

Crystal structure of px domain

5ZN9 · Sorting nexin-27: “Crystal structure of px domain”. X-ray diffraction, 1 ligand (SO4). MolNFT v1 #141913 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5ZN9
Type: protein
Length: 201 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Sorting nexin-27
UniProt: Q96L92
Ligands: SO4

Structure

x-ray diffraction · 2 distinct chains · 43% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Sorting nexin-27	protein	99	43% helix, 22% strand	Q96L92
B	Sorting nexin-27	protein	102	42% helix, 27% strand	Q96L92

Ligands and binding sites

SO4 · Sulfate ion · ion · 3 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 304 Å² buried · 8 hydrogen bonds · protein-protein

Compared structures

5ZN9 · Crystal structure of PX domain · the same entry in another collection · chain A against A, TM-score 1.00
Q96L92 · AlphaFold monomer V2.0 prediction for sorting nexin-27 (Q96L92) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q96L92
Elsewhere: RCSB PDB 5ZN9 · PDBe 5ZN9 · UniProt Q96L92

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