MolNFT v1 · #141874 · protein
X-ray structure of animal-like cryptochrome from chlamydomonas reinhardtii
5ZM0 · Cryptochrome photoreceptor: “X-ray structure of animal-like cryptochrome from chlamydomonas reinhardtii”. X-ray diffraction, 2 ligands (FAD, CL), 2 pockets (best druggability 0.83). MolNFT v1 #141874 on GenesisL1: 3D structure…
- PDB
- 5ZM0
- Type
- protein
- Length
- 491 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cryptochrome photoreceptor
- UniProt
- A8J8W0
- Ligands
- FAD, CL
- Pockets
- 2 · best druggability 0.83
Structure
x-ray diffraction · 1 distinct chain · 49% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cryptochrome photoreceptor | protein | 491 | 49% helix, 5% strand | A8J8W0 |
Ligands and binding sites
- FAD · Flavin-adenine dinucleotide · ligand · chains A
- CL · Chloride ion · ion · 2 copies · chains A
- GOL · Glycerol · additive · 8 copies · chains A
- MES · 2-(N-morpholino)-ethanesulfonic acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 422 | 0.83 | 0.91 | 40 | FAD, GOL, CL |
| 2 | 531 | 0.73 | 0.81 | 39 | GOL, MES |
Compared structures
- 5ZM0 · X-ray structure of animal-like Cryptochrome from Chlamydomonas reinhardtii · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A8J8W0
- Elsewhere: RCSB PDB 5ZM0 · PDBe 5ZM0 · UniProt A8J8W0
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