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X-ray structure of animal-like cryptochrome from chlamydomonas reinhardtii

Analyse X-ray structure of animal-like cryptochrome from chlamydomonas reinhardtii in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5ZM0
Type: protein
Length: 491 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cryptochrome photoreceptor
UniProt: A8J8W0
Ligands: FAD, CL
Pockets: 2 · best druggability 0.83

Structure

x-ray diffraction · 1 distinct chain · 49% helix, 5% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cryptochrome photoreceptor	protein	491	49% helix, 5% strand	A8J8W0

Ligands and binding sites

FAD · Flavin-adenine dinucleotide · ligand · chains A
CL · Chloride ion · ion · 2 copies · chains A
GOL · Glycerol · additive · 8 copies · chains A
MES · 2-(N-morpholino)-ethanesulfonic acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	422	0.83	0.91	40	FAD, GOL, CL
2	531	0.73	0.81	39	GOL, MES

Compared structures

5ZM0 · X-ray structure of animal-like Cryptochrome from Chlamydomonas reinhardtii · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A8J8W0
Elsewhere: RCSB PDB 5ZM0 · PDBe 5ZM0 · UniProt A8J8W0

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