MolNFT v1 · #140923 · protein
Structure and function of a novel periplasmic chitooligosaccharide- binding protein from marine vibrio bacteria
5YQW: “Structure and function of a novel periplasmic chitooligosaccharide- binding protein from marine vibrio…”. X-ray diffraction, 3 ligands (P4G, NAG, NI). MolNFT v1 #140923 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5YQW
- Type
- protein
- Length
- 532 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- D0XC84
- Ligands
- P4G, NAG, NI
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 532 | — | D0XC84 |
Ligands and binding sites
- P4G · 1-ethoxy-2-(2-ethoxyethoxy)ethane · ligand · 2 copies · chains A
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A
- NI · Nickel (II) ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5YQW · Structure and function of a novel periplasmic chitooligosaccharide-binding protein from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D0XC84
- Elsewhere: RCSB PDB 5YQW · PDBe 5YQW · UniProt D0XC84
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