MolNFT v1 · #140902 · protein
Crystal structure of E.COLI aminopeptidase N in complex with puromycin aminonucleoside
5YQ2: “Crystal structure of E.COLI aminopeptidase N in complex with puromycin aminonucleoside”. X-ray diffraction, 2 ligands (GMC, ZN). MolNFT v1 #140902 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5YQ2
- Type
- protein
- Length
- 866 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P04825
- Ligands
- GMC, ZN
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 866 | — | P04825 |
Ligands and binding sites
- GMC · (2R,3R,4S,5S)-4-amino-2-[6-(dimethylamino)-9H-purin-9-yl]-5-(hydroxymethyl)tetrahydro-3-furanol · ligand · chains A
- ZN · Zinc ion · metal · chains A
- GOL · Glycerol · additive · 2 copies · chains A
- MLI · Malonate ion · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5YQ2 · Crystal structure of E.coli aminopeptidase N in complex with Puromycin aminonucleoside · the same entry in another collection · chain A against A, TM-score 1.00
- P04825 · AlphaFold monomer V2.0 prediction for aminopeptidase N (P04825) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P04825
- Elsewhere: RCSB PDB 5YQ2 · PDBe 5YQ2 · UniProt P04825
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