MolNFT v1 · #140888 · protein
Crystal structure of psd-95 gk domain in complex with phospho-sapap peptide
5YPO: “Crystal structure of psd-95 gk domain in complex with phospho-sapap peptide”. X-ray diffraction. MolNFT v1 #140888 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5YPO
- Type
- protein
- Length
- 392 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P31016
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | — | protein | 183 | — | P31016 |
| A | — | protein | 181 | — | P31016 |
| C, D | — | protein | 14 | — | — |
Ligands and binding sites
- GOL · Glycerol · additive · 3 copies · chains B, A, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5YPO · Crystal structure of PSD-95 GK domain in complex with phospho-SAPAP peptide · the same entry in another collection · chain B against B, TM-score 1.00
- P31016 · AlphaFold monomer V2.0 prediction for disks large homolog 4 (P31016) · a predicted model of the same protein · chain B against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P31016
- Elsewhere: RCSB PDB 5YPO · PDBe 5YPO · UniProt P31016
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