MolNFT v1 · #140873 · protein
P62/SQSTM1 zz domain with arg-peptide
5YP8: “P62/SQSTM1 zz domain with arg-peptide”. X-ray diffraction, 1 ligand (ZN). MolNFT v1 #140873 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5YP8
- Type
- protein
- Length
- 100 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P11021, Q13501
- Ligands
- ZN
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 51 | — | P11021, Q13501 |
| B | — | protein | 49 | — | P11021, Q13501 |
Ligands and binding sites
- ZN · Zinc ion · metal · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5YP8 · p62/SQSTM1 ZZ domain with Arg-peptide · the same entry in another collection · chain A against A, TM-score 1.00
- Q13501 · AlphaFold monomer V2.0 prediction for sequestosome-1 (Q13501) · a predicted model of the same protein · chain B against A, TM-score 0.87
- P11021 · AlphaFold monomer V2.0 prediction for endoplasmic reticulum chaperone bip (P11021) · a predicted model of the same protein · chain B against A, TM-score 0.36
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P11021
- Every structure of UniProt Q13501
- Elsewhere: RCSB PDB 5YP8 · PDBe 5YP8 · UniProt P11021 · UniProt Q13501
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