MolNFT v1 · #140747 · protein

Crystal structure of arabidopsis thaliana JMJ14 catalytic domain

5YKN: “Crystal structure of arabidopsis thaliana JMJ14 catalytic domain”. X-ray diffraction, 2 ligands (ZN, NI). MolNFT v1 #140747 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5YKN
Type: protein
Length: 478 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q8GUI6
Ligands: ZN, NI

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	478	—	Q8GUI6

Ligands and binding sites

ZN · Zinc ion · metal · 2 copies · chains A
NI · Nickel (II) ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5YKN · crystal structure of Arabidopsis thaliana JMJ14 catalytic domain · the same entry in another collection · chain A against A, TM-score 1.00
Q8GUI6 · AlphaFold monomer V2.0 prediction for probable lysine-specific demethylase JMJ14 (Q8GUI6) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8GUI6
Elsewhere: RCSB PDB 5YKN · PDBe 5YKN · UniProt Q8GUI6

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