MolNFT v1 · #140603 · protein
Plasmodium vivax shmt bound with plp-glycine and S-GS849
5YG4: “Plasmodium vivax shmt bound with plp-glycine and S-GS849”. X-ray diffraction, 2 ligands (8UF, CL). MolNFT v1 #140603 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5YG4
- Type
- protein
- Length
- 1,329 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A1G4H5I1
- Ligands
- 8UF, CL
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | — | protein | 443 | — | A0A1G4H5I1 |
Ligands and binding sites
- 8UF · 2-[1-[(3~{S})-6'-azanyl-5'-cyano-7-fluoranyl-2,2,3'-trimethyl-spiro[1~{H}-indene-3,4'-2~{H}-pyrano[2,3-c]pyrazole]-5-yl]piperidin-4-yl]ethanoic acid · ligand · 3 copies · chains A, B, C
- CL · Chloride ion · ion · 2 copies · chains A, B, C
- GOL · Glycerol · additive · 3 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5YG4 · Plasmodium vivax SHMT bound with PLP-glycine and S-GS849 · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1G4H5I1
- Elsewhere: RCSB PDB 5YG4 · PDBe 5YG4 · UniProt A0A1G4H5I1
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